MIFE v1

No description specified

Attributes

Name	Type	Description	PID	Unit
Title*	String	Not specified	http://schema.org/name	-
Description	String	Not specified	http://schema.org/description	-
biosafety level	String	Biosafety level of the corresponding sample	http://fairbydesign.nl/ontology/biosafety_level	-
geographic location (country and/or sea)	String	The geographical origin of the sample as defined by the country or sea. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html).	http://fairbydesign.nl/ontology/geographic_location_country_and_or_sea	-
phase	String	A distinct stage in the fermentation process, such as lag phase, log phase, or stationary phase.	http://fairbydesign.nl/ontology/phase	-
phase duration	String	The total time duration of a specific phase in minutes during the fermentation process.	http://fairbydesign.nl/ontology/phase_duration	-
phase purpose	String	The intended outcome or goal of a specific phase in the process, e.g., growth or product synthesis.	http://fairbydesign.nl/ontology/phase_purpose	-
recipe url	String	standard operating procedure (or protocol) for sampling	http://fairbydesign.nl/ontology/recipe_url	-
replicate	String	A role played by a a biological sample in the context of an experiment where the intent is that biological or technical variation is measured.	http://fairbydesign.nl/ontology/replicate	-
sample collection device or method	String	The method or deviced employed for collecting the sample	http://fairbydesign.nl/ontology/sample_collection_device_or_method	-
sample dry mass	String	measurement of dry mass at the time of sample collection; e.g. 0.05g	http://fairbydesign.nl/ontology/sample_dry_mass	-
sample material	String	Sample material from which data deposited was generated, e.g. tissue fragment. If unknown please select "not provided".	http://fairbydesign.nl/ontology/sample_material	-
sample material processing	String	Any processing applied to the sample during or after retrieving the sample from environment. This field accepts OBI, for a browser of OBI (v 2013-10-25) terms please see http://purl.bioontology.org/ontology/OBI	http://fairbydesign.nl/ontology/sample_material_processing	-
sample storage buffer	String	buffer used for sample storage (e.g. RNAlater)	http://fairbydesign.nl/ontology/sample_storage_buffer	-
sample storage conditions	String	Conditions at which sample was stored, usually storage temperature, duration and location	http://fairbydesign.nl/ontology/sample_storage_conditions	-
sample storage container	String	Container that sample was stored in e.g. tube type	http://fairbydesign.nl/ontology/sample_storage_container	-
sample wet mass	String	measurement of wet mass at the time of sample collection; e.g. 0.23 g	http://fairbydesign.nl/ontology/sample_wet_mass	-
sampling time point*	String	Not specified	http://fairbydesign.nl/ontology/sampling_time_point	-
volume	String	Liquid volume in the vessel	http://fairbydesign.nl/ontology/volume	-
scientific name*	String	Name of the organism	http://gbol.life/0.1/scientificName	-
ncbi taxonomy id*	String	Taxonomic identifier of the sample according to https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi for example use 2582415 for a blank sample or 1510822 for pig metagenome	http://purl.uniprot.org/core/organism	-
collection date*	String	The date of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid ISO8601 compliant times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008.	https://w3id.org/mixs/0000011	-
sample storage temperature	String	temperature at which sample was stored, e.g. -80	https://w3id.org/mixs/0000110	-
sample storage duration	String	duration for which sample was stored	https://w3id.org/mixs/0000116	-
sample storage location	String	location at which sample was stored, usually name of a specific freezer/room	https://w3id.org/mixs/0000755	-

Name

Type

Description

PID

Unit

Title*

String

Not specified

http://schema.org/name

Description

String

Not specified

http://schema.org/description

biosafety level

String

Biosafety level of the corresponding sample

http://fairbydesign.nl/ontology/biosafety_level

geographic location (country and/or sea)

String

The geographical origin of the sample as defined by the country or sea. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html).

http://fairbydesign.nl/ontology/geographic_location_country_and_or_sea

phase

String

A distinct stage in the fermentation process, such as lag phase, log phase, or stationary phase.

http://fairbydesign.nl/ontology/phase

phase duration

String

The total time duration of a specific phase in minutes during the fermentation process.

http://fairbydesign.nl/ontology/phase_duration

phase purpose

String

The intended outcome or goal of a specific phase in the process, e.g., growth or product synthesis.

http://fairbydesign.nl/ontology/phase_purpose

recipe url

String

standard operating procedure (or protocol) for sampling

http://fairbydesign.nl/ontology/recipe_url

replicate

String

A role played by a a biological sample in the context of an experiment where the intent is that biological or technical variation is measured.

http://fairbydesign.nl/ontology/replicate

sample collection device or method

String

The method or deviced employed for collecting the sample

http://fairbydesign.nl/ontology/sample_collection_device_or_method

sample dry mass

String

measurement of dry mass at the time of sample collection; e.g. 0.05g

http://fairbydesign.nl/ontology/sample_dry_mass

sample material

String

Sample material from which data deposited was generated, e.g. tissue fragment. If unknown please select "not provided".

http://fairbydesign.nl/ontology/sample_material

sample material processing

String

Any processing applied to the sample during or after retrieving the sample from environment. This field accepts OBI, for a browser of OBI (v 2013-10-25) terms please see http://purl.bioontology.org/ontology/OBI

http://fairbydesign.nl/ontology/sample_material_processing

sample storage buffer

String

buffer used for sample storage (e.g. RNAlater)

http://fairbydesign.nl/ontology/sample_storage_buffer

sample storage conditions

String

Conditions at which sample was stored, usually storage temperature, duration and location

http://fairbydesign.nl/ontology/sample_storage_conditions

sample storage container

String

Container that sample was stored in e.g. tube type

http://fairbydesign.nl/ontology/sample_storage_container

sample wet mass

String

measurement of wet mass at the time of sample collection; e.g. 0.23 g

http://fairbydesign.nl/ontology/sample_wet_mass

sampling time point*

String

Not specified

http://fairbydesign.nl/ontology/sampling_time_point

volume

String

Liquid volume in the vessel

http://fairbydesign.nl/ontology/volume

scientific name*

String

Name of the organism

http://gbol.life/0.1/scientificName

ncbi taxonomy id*

String

Taxonomic identifier of the sample according to https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi for example use 2582415 for a blank sample or 1510822 for pig metagenome

http://purl.uniprot.org/core/organism

collection date*

String

The date of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid ISO8601 compliant times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008.

https://w3id.org/mixs/0000011

sample storage temperature

String

temperature at which sample was stored, e.g. -80

https://w3id.org/mixs/0000110

sample storage duration

String

duration for which sample was stored

https://w3id.org/mixs/0000116

sample storage location

String

location at which sample was stored, usually name of a specific freezer/room

https://w3id.org/mixs/0000755

MIFE v1

Attributes

Tags

Creator

Submitter

MIFE v1

Attributes

Tags

Creator

Submitter

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